Index

A

add_complex() (sign_vector_conditions.reaction_networks.ReactionNetwork method) add_complexes() (sign_vector_conditions.reaction_networks.ReactionNetwork method)

add_reaction() (sign_vector_conditions.reaction_networks.ReactionNetwork method) add_reactions() (sign_vector_conditions.reaction_networks.ReactionNetwork method) are_both_deficiencies_zero() (sign_vector_conditions.reaction_networks.ReactionNetwork method)

C

Complex (class in sign_vector_conditions.reaction_networks) condition_closure_minors() (in module sign_vector_conditions.robustness) condition_closure_sign_vectors() (in module sign_vector_conditions.robustness) condition_degenerate() (in module sign_vector_conditions.unique_existence)

condition_faces() (in module sign_vector_conditions.unique_existence) condition_nondegenerate() (in module sign_vector_conditions.unique_existence) condition_uniqueness_minors() (in module sign_vector_conditions.uniqueness) condition_uniqueness_sign_vectors() (in module sign_vector_conditions.uniqueness)

D

deficiency_kinetic_order (sign_vector_conditions.reaction_networks.ReactionNetwork property)

deficiency_stoichiometric (sign_vector_conditions.reaction_networks.ReactionNetwork property) differential_equation() (sign_vector_conditions.reaction_networks.ReactionNetwork method)

E

examples.ICMS_2024 module

F

from_species() (sign_vector_conditions.reaction_networks.Complex static method)

G

get_coefficient() (sign_vector_conditions.reaction_networks.Complex method)

H

has_at_most_one_cbe() (sign_vector_conditions.reaction_networks.ReactionNetwork method)

has_exactly_one_cbe() (sign_vector_conditions.reaction_networks.ReactionNetwork method) has_robust_cbe() (sign_vector_conditions.reaction_networks.ReactionNetwork method)

I

incidence_matrix() (sign_vector_conditions.reaction_networks.ReactionNetwork method)

involved_species() (sign_vector_conditions.reaction_networks.Complex method) is_weakly_reversible() (sign_vector_conditions.reaction_networks.ReactionNetwork method)

K

kinetic_order_matrix (sign_vector_conditions.reaction_networks.ReactionNetwork property)

kinetic_order_matrix_as_kernel (sign_vector_conditions.reaction_networks.ReactionNetwork property)

L

laplacian_matrix() (sign_vector_conditions.reaction_networks.ReactionNetwork method)

M

matrix_of_complexes_kinetic_order (sign_vector_conditions.reaction_networks.ReactionNetwork property) matrix_of_complexes_stoichiometric (sign_vector_conditions.reaction_networks.ReactionNetwork property) module examples.ICMS_2024 sign_vector_conditions.reaction_networks sign_vector_conditions.robustness sign_vector_conditions.unique_existence sign_vector_conditions.uniqueness

P

plot() (sign_vector_conditions.reaction_networks.ReactionNetwork method)

R

rate_constants() (sign_vector_conditions.reaction_networks.ReactionNetwork method) ReactionNetwork (class in sign_vector_conditions.reaction_networks)

reactions (sign_vector_conditions.reaction_networks.ReactionNetwork property) remove_complex() (sign_vector_conditions.reaction_networks.ReactionNetwork method) remove_reaction() (sign_vector_conditions.reaction_networks.ReactionNetwork method)

S

set_rate_constant_variable() (sign_vector_conditions.reaction_networks.ReactionNetwork method) sign_vector_conditions.reaction_networks module sign_vector_conditions.robustness module sign_vector_conditions.unique_existence module

sign_vector_conditions.uniqueness module source_matrix() (sign_vector_conditions.reaction_networks.ReactionNetwork method) species (sign_vector_conditions.reaction_networks.ReactionNetwork property) species() (in module sign_vector_conditions.reaction_networks) stoichiometric_matrix (sign_vector_conditions.reaction_networks.ReactionNetwork property) stoichiometric_matrix_as_kernel (sign_vector_conditions.reaction_networks.ReactionNetwork property)